Relevant publications authored by genexa team members


De novo assembly of individual genomes
2018
[4] Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats (; ; ; ; ; and ), In Nucleic Acids Research, . [pdf] [doi]
[3] Pseudomonas orientalis F9: A Potent Antagonist against Phytopathogens with Phytotoxic Effect in the Apple Flower (; ; ; ; ; and ), In Frontiers in Microbiology, volume 9, . [pdf] [doi]
2017
[2] Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi (; ; and ), In BMC microbiology, BioMed Central, volume 17, . [pdf] [doi]
[1] Biofilm Formation Potential of Heat-Resistant Escherichia coli Dairy Isolates and the Complete Genome of Multidrug-Resistant, Heat-Resistant Strain FAM21845 (; ; ; ; ; ; and ), In Applied and Environmental Microbiology (Björkroth, Johanna, ed.), American Society for Microbiology Journals, volume 83, . [pdf] [doi]

Microbiomes, assembly of metagenomes
2018
[1] Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system (; ; ; ; ; ; and ), In bioRxiv, Cold Spring Harbor Laboratory, . [pdf] [doi]

Comparative genomics
2018
[1] Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level (; ; ; ; ; ; ; ; ; ; ; and ), In Frontiers in Microbiology, volume 9, . [pdf] [doi]

Algorithms, computational
2016
[1] Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells (; ; ; ; and ), In mSphere (Imperiale, Michael J., ed.), American Society for Microbiology Journals, volume 1, . [pdf] [doi]